Payroll and Employment Taxes in Kenya

Payroll taxes in Kenya that are of key importance to employers include PAYE, NSSF, and NHIF. Learn more about the processes for setting up payroll, calculating taxes, submitting payments compliantly, and adhering to due dates in Kenya.

Iconic landmark in Kenya

Capital City

Nairobi

Currency

Kenyan Shilling

(

KSh

)

Timezone

EAT

(

GMT +3

)

Payroll

Monthly

Employment Cost

8.40%

Milani Notshe

Research Specialist

Last Updated

June 13, 2025

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Overview of Payroll Taxes in Kenya

Understanding and complying with payroll and employment taxes is essential for businesses of all sizes in Kenya. Employers need to be aware of several tax obligations, including income tax withholding, social security contributions, and local levies. Managing payroll taxes can present challenges, especially for small businesses, which may struggle with the complexity of tax calculations and timely filing. Non-compliance can lead to penalties, strained employee relations, and reputational damage. This article will guide employers through the process of understanding key payroll taxes, including how to calculate them, meet filing deadlines, and comply with regulatory requirements in Kenya. The tax obligations can vary based on factors such as income levels, business size, and location, making it crucial to stay informed and compliant.

Fiscal Year in Kenya

1 July - 30 June is the 12-month accounting period that businesses in Kenya use for financial and tax reporting purposes.

Payroll Cycle in Kenya

The payroll cycle in Kenya is usually monthly, with employees being paid on the last day of the month.

Bonus Payments in Kenya

There are no legal provisions for 13th-month payments in Kenya.

How is Payroll Calculated in Kenya?

In Kenya, payroll is calculated by considering the gross salary of employees, which includes basic pay and any other allowances or bonuses. From this amount, deductions such as Pay As You Earn (PAYE) tax, National Social Security Fund (NSSF) contributions, and National Hospital Insurance Fund (NHIF) payments are subtracted. Employers also need to account for other benefits or withholdings, including pension contributions. After applying the relevant tax brackets and deductions, the employer can determine the net salary to be paid to employees.

Types of Payroll Taxes in Kenya

There are several types of payroll taxes in Kenya that businesses must manage. These taxes have specific regulations and rates, making it important for employers to stay updated. The main taxes include:

Pay As You Earn (PAYE)

PAYE is a tax levied on an employee’s earnings, based on a progressive scale. Employers are responsible for withholding and remitting PAYE to the Kenya Revenue Authority (KRA). The tax rate ranges from 10% to 30%, depending on the income bracket. PAYE must be submitted monthly, and failure to comply can result in significant penalties.

National Social Security Fund (NSSF)

NSSF is a mandatory contribution towards social security, which provides benefits such as pensions and healthcare. Employees and employers contribute 6% of the employee’s monthly earnings, subject to a maximum limit. This contribution must be remitted by the 9th of every month to avoid penalties.

National Hospital Insurance Fund (NHIF)

NHIF contributions are mandatory for employees to access healthcare services. The rate of contribution varies depending on the employee’s salary, ranging from Ksh 150 to Ksh 1,700 per month. Employers must ensure timely remittance of NHIF contributions by the 9th of every month.

How to Set Up a Payroll in Kenya

Registering with Kenyan Authorities

To set up payroll, businesses must register with the Kenya Revenue Authority (KRA) for tax purposes and the National Social Security Fund (NSSF) for social security contributions. Employers must also register with the National Hospital Insurance Fund (NHIF) to make the necessary contributions.

Choosing a Payroll System

Businesses can choose between manual payroll systems or automated payroll software to streamline operations. For larger businesses, automated systems are recommended to ensure accuracy and compliance with tax regulations. Payroll software like Playroll can help ensure accurate calculations, timely filings, and compliance with the tax authority's regulations.

Onboarding Employees for Payroll

Onboarding employees involves collecting necessary documents such as identification cards, KRA PIN numbers, NSSF numbers, and NHIF cards. These documents will be used to set up payroll records and ensure the proper deductions are made.

Step-by-Step Payroll Processing in Kenya

Collecting Timesheets and Attendance Data

To calculate accurate payroll, businesses should collect employee work hours and attendance data. This can be done manually or using automated systems that track attendance and overtime.

Calculating Salaries and Deductions

Once work hours are collected, businesses need to calculate the gross salary, then deduct PAYE, NSSF, and NHIF contributions. The net salary is the amount the employee will receive.

Generating and Distributing Payslips

Employers must generate payslips for employees that detail the gross salary, deductions, and net salary. Payslips should be distributed to employees monthly, ensuring transparency.

Submitting Payroll to Authorities

Employers are required to submit payroll taxes (PAYE, NSSF, NHIF) to the respective authorities on time. PAYE must be submitted to KRA, while NSSF and NHIF contributions must be remitted to the respective institutions by the 9th of each month.

Paying Employees

Employees should be paid on the agreed-upon payday, typically at the end of each month, through bank transfers or cash.

How to Submit Payroll Tax in Kenya

     
  • PAYE: Remitted to the Kenya Revenue Authority (KRA) through their online portal (iTax).
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  • NSSF Contributions: Paid to the National Social Security Fund through the NSSF portal.
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  • NHIF Contributions: Paid through the NHIF portal or the employer’s bank.

Payroll Tax Due Dates in Kenya

Tax Type Due Date
PAYE 9th of every month
NSSF 9th of every month
NHIF 9th of every month

Payroll Contributions in Kenya

Understanding the tax obligations for both employers and employees is crucial when operating in Kenya's business landscape. This section explains how taxes and statutory fees affect payroll and individual earnings in Kenya.

Employer Tax Contributions

Employer payroll contributions are generally estimated at an additional 8.4% on top of the employee salary in Kenya.

Tax TypeTax Rate
National Social Security Fund Contribution (up to a maximum of 18,000 KES for the contribution)6%
WIBA (Work Injury Benefits Act) Contribution0.91%
Affordable Housing Levy1.5%
NITA (National Industrial Training Authority) Contribution50 KES

Employee Payroll Tax Contributions

In Kenya , the typical estimation for employee payroll contributions cost is around 6% + 1,700 KES%.

Tax TypeTax Rate
National Social Security Fund (NSSF) (contributions capped at 200 KES monthly)6%
National Housing Development Fund1.5%
National Hospital Insurance Fund (NHIF) (for employees earning over 100,000 KES monthly, a 15% tax will apply to contributions)150 - 1,700 KES

Individual Income Tax Contributions

The calculation of individual income tax in Kenya follows a progressive rate system, and the government employs a "Pay As You Earn" model.

Income BracketTax Rate
On the first 288,000 KES per year 10%
Next 100,000 KES per year25%
Next 5,612,000 KES per year30%
Next 3,600,000 KES per year33%
On all income over 9,600,000 KES per year35%

Pension in Kenya

The National Social Security Fund Act 2013 in Kenya covers old age benefits and presents three payment choices: buying a life annuity, receiving a partial lump sum, or a blend of both. Contributions to the NSSF Pension, which amount to 12% of pensionable earnings, are evenly divided between the employee and employer, with a maximum cap set at 2,160 KES.

Managing Common Payroll Challenges in Kenya

Global employers operating in Kenya often encounter unique payroll challenges that can affect compliance and efficiency, like navigating evolving tax laws and managing employee data. With a need for real-time accuracy, modern organizations must develop strategies to overcome these challenges effectively. Below, we explore some of the most common payroll hurdles and provide actionable solutions to streamline payroll processes in Kenya.

Maintaining Accurate and Detailed Payroll Reports

Maintaining accurate global payroll reports is often challenging due to currency exchange complexities, data integration issues, and the need to keep employee information up-to-date – including tax information, hours worked, leave balances, and any changes in salary or job status. Generating accurate reports is easy with a comprehensive payroll automation tool that consolidates fragmented data sources, and can keep track of employee payments and deductions.

Keeping Up With Ever-Changing Tax Laws & Compliance Laws

In Kenya, tax laws and compliance regulations can change frequently, presenting a significant challenge for global employers. Monitoring updates to federal, state, and local tax codes is crucial to avoid non-compliance and costly penalties, but requires significant time and resources. Partnering with local experts or a reputable global HR platform is an effective way to maintain compliance. These services can help employers stay compliant with evolving regulations while freeing up time for more strategic work.

Consolidating Multi-Vendor Payroll Analytics

Managing payroll across multiple vendors often leads to fragmented data and inefficiencies, making it difficult to consolidate analytics. These challenges can hinder decision-making, especially when trying to gain a clear view of workforce costs and trends. To address this, organizations can invest in a centralized payroll management system that unifies data from multiple vendors. A consolidated platform simplifies payroll tracking, ensures data accuracy, and provides actionable insights into payroll expenditures.

Integrating Multiple HR & Payroll Systems

Global companies are prone to using multiple HR or payroll systems across regions, which can easily lead to fragmented payroll data, increasing the risk of delays and errors in employee compensation. To combat this, seamless integration between payroll and other systems is critical.

Payroll management systems that connect with existing HR and financial platforms can help streamline workflows by reducing manual inputs and ensuring that all departments operate with up-to-date, accurate information. In turn, this helps guarantee on-time, accurate payroll, boosting employee satisfaction.

What Does a Global Payroll Management Platform Cover?

A global payroll management platform is a software solution designed to streamline and automate the payroll processes for organizations with employees across multiple countries. It helps ensure accurate and timely payment while maintaining compliance with legal and regulatory requirements in Kenya.

Key functions of a payroll management platform can include:

       
  • Consolidate payroll data: Streamline fragmented payroll data into one source of truth when you’re operating in multiple regions.
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  • Analytics and reporting: Advanced capabilities to analyze payroll data and generate automated reports per region.
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  • Monitor and standardize payroll: Get an accurate view of employee costs, bonuses, and taxes per region, catch variances, and standardize payroll processes across regions to minimize errors.
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  • Compliance and record-keeping: Maintains accurate payroll records and ensures adherence to labor laws and regulations, reducing the risk of legal issues.
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  • Employee self-service: Provides portals where employees can access pay stubs, update personal information, and manage benefits selections.

How Playroll Can Streamline Payroll & Taxes in Kenya

Expanding globally is an exciting milestone for any company, but it comes coupled with complex payroll challenges. It doesn’t have to be complicated. At Playroll, our easy-to-implement global payroll management software combines automation with hands-on support to make global payroll truly simple. Here's how Playroll helps:

       
  • Multi-Vendor Integration: Our platform syncs seamlessly with your providers and in-house systems to unify global payroll services in one platform.
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  • Standardize Payroll Processes: Unify your operations in one dashboard to ensure payroll is running smoothly globally, with advanced approval flows and reports.
  •    
  • Improve Governance & Compliance: Improve compliance by centralizing all your compliance tasks and processes. Easily track your payment obligations, with digitized audit trails.
  •    
  • Advanced Reporting: Access and configure your data, your way, with a comprehensive suite of payroll analytics and reporting tools.

Disclaimer

THIS CONTENT IS FOR INFORMATIONAL PURPOSES ONLY AND DOES NOT CONSTITUTE LEGAL OR TAX ADVICE. You should always consult with and rely on your own legal and/or tax advisor(s). Playroll does not provide legal or tax advice. The information is general and not tailored to a specific company or workforce and does not reflect Playroll’s product delivery in any given jurisdiction. Playroll makes no representations or warranties concerning the accuracy, completeness, or timeliness of this information and shall have no liability arising out of or in connection with it, including any loss caused by use of, or reliance on, the information.

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ABOUT THE AUTHOR

Milani Notshe

Milani is a seasoned research and content specialist at Playroll, a leading Employer Of Record (EOR) provider. Backed by a strong background in Politics, Philosophy and Economics, she specializes in identifying emerging compliance and global HR trends to keep employers up to date on the global employment landscape.

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FAQS

FAQs about Payroll in Kenya

Questions and Answers

How do you calculate payroll taxes in Kenya?

Payroll taxes in Kenya are calculated by deducting PAYE, NSSF, and NHIF contributions from the gross salary based on the tax brackets and the employee's income.

What are the payroll options for employers in Kenya?

Employers in Kenya can choose between using manual payroll systems or automated payroll software like Playroll.

What are the key elements of payroll in Kenya?

The key elements include gross salary, tax calculations (PAYE), social security contributions (NSSF), and healthcare contributions (NHIF).

How much is payroll tax in Kenya?

The payroll tax range for PAYE is 10% to 30%, while NSSF is 6% of monthly earnings, and NHIF contributions range from Ksh 150 to Ksh 1,700 depending on the salary.