Payroll and Employment Taxes in Lithuania

Overview of Payroll Taxes in Lithuania

Whether you’re running a small startup or managing payroll for a multinational, understanding Lithuania’s payroll and employment taxes is essential. Employers must navigate income tax withholding, social security contributions (including health insurance and pension), and occasionally local levies tied to benefits or industry. Managing payroll taxes here comes with its challenges—calculation complexity, evolving thresholds, and tight deadlines—and non‑compliance can lead to fines, interest charges, and even unhappy employees.

This article will guide you through the critical elements of payroll in Lithuania—how to calculate withholdings, meet filing deadlines, and submit returns—while noting that requirements can differ based on location, employee income levels, and the size or type of your business.

Fiscal Year in Lithuania

1 January - 31 December is the 12-month accounting period that businesses in Lithuania use for financial and tax reporting purposes.

Payroll Cycle in Lithuania

The payroll cycle in Lithuania is usually monthly , with employees being paid by the 10th of the following month..

Minimum Wage in Lithuania

As of January 1, 2025, Lithuania's minimum wage rates are:

• Minimum Monthly Wage: €1,038 for a typical 40-hour work week.
• Minimum Hourly Wage: €6.35

This increase from €924 to €1,038 represents a 12.3% rise, which reflects the government's strategy to maintain the minimum wage between 45% and 50% of the average wage. These rates are set by the Lithuanian government and are subject to annual review and adjustment based on economic conditions.

Bonus Payments in Lithuania

In Lithuania, 13th-month payments are not mandated by law, but many employers offer performance-based bonuses as a common practice.

How is Payroll Calculated in Lithuania?

Payroll in Lithuania starts with gross salary, to which employers and employees apply social security contributions. Employers pay a small percentage (typically 1.77–2.49 %), while employees contribute much more (19.5 % up to a certain income ceiling, then 6.98 %). On top of that, personal income tax (PIT) is withheld—20 % for most earnings, and 32 % above the annual threshold. Employers must also monitor non‑taxable income allowances, like the “NPD”, which reduce employee PIT obligations.

Types of Payroll Taxes in Lithuania

Social Security Contributions

These contributions cover healthcare, pensions, and unemployment benefits. Employer rates vary from 1.61 % to 2.49 % depending on the type of employment contract, while employees pay 19.5 % on income up to €126 532 annually, and 6.98 % on amounts above that. Returns and payments are due by the 15th of the following month. Late submissions may result in interest and penalties.

Personal Income Tax

Personal income tax is withheld directly from employee wages. The standard rate is 20 % up to an annual income of approximately €114 162, increasing to 32 % on higher earnings. Employers are responsible for deducting and remitting this tax monthly. Non-compliance can result in fines and interest charges.

Optional Pension Contribution

Employees can opt to contribute an additional 3 % to the second-pillar pension fund, with a 1.5 % contribution from the state. These contributions are deductible and must be withheld by the employer and paid alongside social security. Penalties apply for non-remittance.

How to Set Up a Payroll in Lithuania?

Registering with Lithuanian Authorities

Businesses must register with Sodra (State Social Insurance Fund Board) for social security and the State Tax Inspectorate (VMI) for income tax. This includes obtaining a payroll tax ID, setting up electronic credentials, and registering for any mandatory benefit schemes.

Choosing a Payroll System

Employers can choose from payroll software or full-service providers. Good solutions automate calculations, payslips, tax filings, and compliance. Options include:

• Playroll
 
• Papaya Global
 
• Remote

Onboarding Employees for Payroll

During onboarding, collect employee ID, tax residency, contract type, bank details, and information about non-taxable allowances or pension fund participation. This ensures the payroll system reflects accurate data for withholdings and reporting.

Step-by-Step Payroll Processing in Lithuania

Collecting Timesheets and Attendance Data

Employers must collect detailed records of employee working hours, overtime, and leave. Lithuania requires overtime pay at elevated rates (1.5x to 2.5x). Accuracy here directly affects payroll calculations.

Calculating Salaries and Deductions

Calculate gross pay and apply statutory deductions: social security, PIT, and optional pension. Use the correct thresholds, ceilings, and contribution rates as mandated by law.

Generating and Distributing Payslips

Employers must issue monthly payslips showing gross salary, all deductions, net pay, and employer contributions. These can be provided digitally or in print, and must meet VMI transparency standards.

Submitting Payroll to Authorities

Submit payroll data and returns electronically to VMI and Sodra by the 15th of the month following payroll. On-time payment of due amounts is critical to avoid penalties.

Paying Employees

Salaries must be transferred by the agreed payday, typically monthly. Payments must comply with Lithuanian wage laws and reflect any terms outlined in employment contracts.

How to Submit Payroll Tax in Lithuania

 
• VMI e-portal: Primary system for filing income tax returns.
 
• Sodra portal: Used to submit social security data and returns.
 
• Bank transfers: Required for remitting taxes, using the correct payment codes.
 
• Third-party platforms: Tools like Playroll can automate filing and payments on your behalf.

Payroll Tax Due Dates in Lithuania

Payroll Contributions in Lithuania

Understanding the tax obligations for both employers and employees is crucial when operating in Lithuania's business landscape. This section explains how taxes and statutory fees affect payroll and individual earnings in Lithuania.

Employer Tax Contributions

Employer payroll contributions are generally estimated at an additional 1.77% on top of the employee salary in Lithuania.

Employee Payroll Tax Contributions

In Lithuania, the typical estimation for employee payroll contributions cost is around 19.5%.

Individual Income Tax Contributions

In Lithuania, individual income tax rates are either 20% or 32%, calculated at a flat rate.

Pension in Lithuania

In Lithuania, the pension system comprises both state and private components. The state pension is funded through social security contributions from employees and employers. Eligibility for state pension benefits is based on factors such as age, employment history, and contributions. Additionally, individuals can opt for private pension schemes to supplement their retirement income.

Ready for Payroll That Fits Your Workflow?

Make better business decisions by consolidating global payroll data, while seamlessly syncing your existing payroll operations.

• Instantly integrate outsourced and in-house payroll.
• Interactive variance analysis to prevent errors.
• Create custom reports and access in-depth analytics.

Book a Demo

Managing Common Payroll Challenges in Lithuania

Global employers operating in Lithuania often encounter unique payroll challenges that can affect compliance and efficiency, like navigating evolving tax laws and managing employee data. With a need for real-time accuracy, modern organizations must develop strategies to overcome these challenges effectively. Below, we explore some of the most common payroll hurdles and provide actionable solutions to streamline payroll processes in Lithuania.

Maintaining Accurate and Detailed Payroll Reports

Maintaining accurate global payroll reports is often challenging due to currency exchange complexities, data integration issues, and the need to keep employee information up-to-date – including tax information, hours worked, leave balances, and any changes in salary or job status. Generating accurate reports is easy with a comprehensive payroll automation tool that consolidates fragmented data sources, and can keep track of employee payments and deductions.

Keeping Up With Ever-Changing Tax Laws & Compliance Laws

In Lithuania, tax laws and compliance regulations can change frequently, presenting a significant challenge for global employers. Monitoring updates to federal, state, and local tax codes is crucial to avoid non-compliance and costly penalties, but requires significant time and resources. Partnering with local experts or a reputable global HR platform is an effective way to maintain compliance. These services can help employers stay compliant with evolving regulations while freeing up time for more strategic work.

Consolidating Multi-Vendor Payroll Analytics

Managing payroll across multiple vendors often leads to fragmented data and inefficiencies, making it difficult to consolidate analytics. These challenges can hinder decision-making, especially when trying to gain a clear view of workforce costs and trends. To address this, organizations can invest in a centralized payroll management system that unifies data from multiple vendors. A consolidated platform simplifies payroll tracking, ensures data accuracy, and provides actionable insights into payroll expenditures.

Integrating Multiple HR & Payroll Systems

Global companies are prone to using multiple HR or payroll systems across regions, which can easily lead to fragmented payroll data, increasing the risk of delays and errors in employee compensation. To combat this, seamless integration between payroll and other systems is critical.

Payroll management systems that connect with existing HR and financial platforms can help streamline workflows by reducing manual inputs and ensuring that all departments operate with up-to-date, accurate information. In turn, this helps guarantee on-time, accurate payroll, boosting employee satisfaction.

What Does a Global Payroll Management Platform Cover?

A global payroll management platform is a software solution designed to streamline and automate the payroll processes for organizations with employees across multiple countries. It helps ensure accurate and timely payment while maintaining compliance with legal and regulatory requirements in Lithuania.

Key functions of a payroll management platform can include:

• Consolidate payroll data: Streamline fragmented payroll data into one source of truth when you’re operating in multiple regions.
   
• Analytics and reporting: Advanced capabilities to analyze payroll data and generate automated reports per region.
   
• Monitor and standardize payroll: Get an accurate view of employee costs, bonuses, and taxes per region, catch variances, and standardize payroll processes across regions to minimize errors.
   
• Compliance and record-keeping: Maintains accurate payroll records and ensures adherence to labor laws and regulations, reducing the risk of legal issues.
   
• Employee self-service: Provides portals where employees can access pay stubs, update personal information, and manage benefits selections.

How Playroll Can Streamline Payroll & Taxes in Lithuania

Expanding globally is an exciting milestone for any company, but it comes coupled with complex payroll challenges. It doesn’t have to be complicated. At Playroll, our easy-to-implement global payroll management software combines automation with hands-on support to make global payroll truly simple. Here's how Playroll helps:

• Multi-Vendor Integration: Our platform syncs seamlessly with your providers and in-house systems to unify global payroll services in one platform.
   
• Standardize Payroll Processes: Unify your operations in one dashboard to ensure payroll is running smoothly globally, with advanced approval flows and reports.
   
• Improve Governance & Compliance: Improve compliance by centralizing all your compliance tasks and processes. Easily track your payment obligations, with digitized audit trails.
   
• Advanced Reporting: Access and configure your data, your way, with a comprehensive suite of payroll analytics and reporting tools.